Detailed information of SNP:
|
SNP ID:
sf0614573228(Gbrowse)
Chromosome: chr06 Position: 14573228 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 96.71% | 3.29% |
| All Indica | 778 | 94.47% | 5.53% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 203 | 89.66% | 10.34% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614573228 | T->A | LOC_Os06g24840(LOC_Os06g24840.1) | INTRON |