Detailed information of SNP:
|
SNP ID:
sf0614626606(Gbrowse)
Chromosome: chr06 Position: 14626606 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 53.13% | 46.87% |
| All Indica | 755 | 89.40% | 10.60% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 356 | 87.92% | 12.08% |
| Indica II | 199 | 94.47% | 5.53% |
| Indica Intermediate | 200 | 87.00% | 13.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614626606 | C->G | INTERGENIC | None |