Detailed information of SNP:
|
SNP ID:
sf0614628249(Gbrowse)
Chromosome: chr06 Position: 14628249 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 57.47% | 42.53% |
| All Indica | 787 | 90.72% | 9.28% |
| All Japonica | 495 | 5.05% | 94.95% |
| Aus | 23 | 69.57% | 30.43% |
| Indica I | 367 | 92.37% | 7.63% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 6 | 33.33% | 66.67% |
| Intermediate | 34 | 47.06% | 52.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614628249 | T->A | INTERGENIC | None |