Detailed information of SNP:
|
SNP ID:
sf0614651166(Gbrowse)
Chromosome: chr06 Position: 14651166 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 72.36% | 27.64% |
| All Indica | 754 | 51.33% | 48.67% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 43.71% | 56.29% |
| Indica II | 202 | 43.07% | 56.93% |
| Indica Intermediate | 202 | 72.77% | 27.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614651166 | C->T | INTERGENIC | None |