Detailed information of SNP:
|
SNP ID:
sf0614702628(Gbrowse)
Chromosome: chr06 Position: 14702628 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 64.93% | 35.07% |
| All Indica | 736 | 42.12% | 57.88% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 343 | 51.90% | 48.10% |
| Indica II | 198 | 31.82% | 68.18% |
| Indica Intermediate | 195 | 35.38% | 64.62% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 7 | 57.14% | 42.86% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614702628 | G->A | INTERGENIC | None |