Detailed information of SNP:
|
SNP ID:
sf0614714409(Gbrowse)
Chromosome: chr06 Position: 14714409 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 83.66% | 16.34% |
| All Indica | 772 | 75.00% | 25.00% |
| All Japonica | 494 | 96.15% | 3.85% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 362 | 83.15% | 16.85% |
| Indica II | 207 | 65.22% | 34.78% |
| Indica Intermediate | 203 | 70.44% | 29.56% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614714409 | C->T | LOC_Os06g25150(LOC_Os06g25150.1) | INTRON |