Detailed information of SNP:
|
SNP ID:
sf0614724086(Gbrowse)
Chromosome: chr06 Position: 14724086 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 95.03% | 4.97% |
| All Indica | 749 | 91.32% | 8.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 345 | 90.72% | 9.28% |
| Indica II | 204 | 95.10% | 4.90% |
| Indica Intermediate | 200 | 88.50% | 11.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614724086 | G->A | LOC_Os06g25170(LOC_Os06g25170.1) | Non-Synonymous SNP |