Detailed information of SNP:
|
SNP ID:
sf0614738288(Gbrowse)
Chromosome: chr06 Position: 14738288 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 69.11% | 30.89% |
| All Indica | 761 | 59.26% | 40.74% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 359 | 66.02% | 33.98% |
| Indica II | 201 | 54.73% | 45.27% |
| Indica Intermediate | 201 | 51.74% | 48.26% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614738288 | C->T | INTERGENIC | None |