Detailed information of SNP:
|
SNP ID:
sf0614794779(Gbrowse)
Chromosome: chr06 Position: 14794779 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 64.46% | 35.54% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 486 | 5.56% | 94.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 328 | 1.22% | 98.78% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614794779 | T->C | LOC_Os06g25280(LOC_Os06g25280.1) | Non-Synonymous SNP |