Detailed information of SNP:
|
SNP ID:
sf0614798712(Gbrowse)
Chromosome: chr06 Position: 14798712 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.57% | 39.43% |
| All Indica | 796 | 32.29% | 67.71% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 25.94% | 74.06% |
| Indica II | 212 | 37.26% | 62.74% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614798712 | T->C | INTERGENIC | None |