Detailed information of SNP:
SNP ID:
sf0614827123(Gbrowse)
Chromosome: chr06 Position: 14827123 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1406 | 97.80% | 2.20% |
All Indica | 786 | 96.44% | 3.56% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 372 | 98.92% | 1.08% |
Indica II | 209 | 94.26% | 5.74% |
Indica Intermediate | 205 | 94.15% | 5.85% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0614827123 | G->A | LOC_Os06g25320(LOC_Os06g25320.1) | INTRON |