Detailed information of SNP:
|
SNP ID:
sf0614828826(Gbrowse)
Chromosome: chr06 Position: 14828826 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 69.94% | 30.06% |
| All Indica | 769 | 49.80% | 50.20% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 358 | 42.46% | 57.54% |
| Indica II | 207 | 41.55% | 58.45% |
| Indica Intermediate | 204 | 71.08% | 28.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614828826 | G->A | LOC_Os06g25320(LOC_Os06g25320.1) | INTRON |