Detailed information of SNP:
|
SNP ID:
sf0614841116(Gbrowse)
Chromosome: chr06 Position: 14841116 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 96.13% | 3.87% |
| All Indica | 782 | 94.25% | 5.75% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 369 | 98.92% | 1.08% |
| Indica II | 208 | 90.38% | 9.62% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614841116 | C->T | LOC_Os06g25340(LOC_Os06g25340.1) | INTRON |