Detailed information of SNP:
|
SNP ID:
sf0614843475(Gbrowse)
Chromosome: chr06 Position: 14843475 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.60% | 43.40% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614843475 | G->A | LOC_Os06g25340(LOC_Os06g25340.1) | INTRON |