Detailed information of SNP:
|
SNP ID:
sf0614864429(Gbrowse)
Chromosome: chr06 Position: 14864429 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 56.07% | 43.93% |
| All Indica | 759 | 84.98% | 15.02% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 84.92% | 15.08% |
| Indica II | 203 | 82.76% | 17.24% |
| Indica Intermediate | 198 | 87.37% | 12.63% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614864429 | A->G | INTERGENIC | None |