Detailed information of SNP:
|
SNP ID:
sf0614932792(Gbrowse)
Chromosome: chr06 Position: 14932792 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 50.53% | 49.47% |
| All Indica | 791 | 82.81% | 17.19% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 368 | 82.61% | 17.39% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614932792 | C->T | INTERGENIC | None |