Detailed information of SNP:
|
SNP ID:
sf0614957336(Gbrowse)
Chromosome: chr06 Position: 14957336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1275 | 92.86% | 7.14% |
| All Indica | 662 | 86.86% | 13.14% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 301 | 86.05% | 13.95% |
| Indica II | 174 | 97.13% | 2.87% |
| Indica Intermediate | 187 | 78.61% | 21.39% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614957336 | C->T | INTERGENIC | None |