Detailed information of SNP:
|
SNP ID:
sf0614981180(Gbrowse)
Chromosome: chr06 Position: 14981180 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 92.96% | 7.04% |
| All Indica | 774 | 88.76% | 11.24% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 368 | 90.49% | 9.51% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 199 | 87.94% | 12.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614981180 | G->A | LOC_Os06g25620(LOC_Os06g25620.1) | INTRON |