Detailed information of SNP:
|
SNP ID:
sf0614983994(Gbrowse)
Chromosome: chr06 Position: 14983994 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 54.41% | 45.59% |
| All Indica | 777 | 90.86% | 9.14% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 363 | 92.01% | 7.99% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614983994 | G->T | LOC_Os06g25630(LOC_Os06g25630.1) | SNPs that introduce stop codons |