Detailed information of SNP:
|
SNP ID:
sf0614991515(Gbrowse)
Chromosome: chr06 Position: 14991515 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 54.49% | 45.51% |
| All Indica | 794 | 89.04% | 10.96% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 372 | 93.01% | 6.99% |
| Indica II | 211 | 85.78% | 14.22% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0614991515 | T->C | LOC_Os06g25660(LOC_Os06g25660.1) | Synonymous |