Detailed information of SNP:
|
SNP ID:
sf0615015615(Gbrowse)
Chromosome: chr06 Position: 15015615 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 57.85% | 42.15% |
| All Indica | 795 | 95.22% | 4.78% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615015615 | G->C | LOC_Os06g25710(LOC_Os06g25710.1) | INTRON |