Detailed information of SNP:
|
SNP ID:
sf0615018601(Gbrowse)
Chromosome: chr06 Position: 15018601 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 50.72% | 49.28% |
| All Indica | 778 | 19.54% | 80.46% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 364 | 23.35% | 76.65% |
| Indica II | 209 | 13.40% | 86.60% |
| Indica Intermediate | 205 | 19.02% | 80.98% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615018601 | C->T | INTERGENIC | None |