Detailed information of SNP:
|
SNP ID:
sf0615022143(Gbrowse)
Chromosome: chr06 Position: 15022143 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 54.07% | 45.93% |
| All Indica | 701 | 19.26% | 80.74% |
| All Japonica | 486 | 97.33% | 2.67% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 336 | 21.13% | 78.87% |
| Indica II | 180 | 19.44% | 80.56% |
| Indica Intermediate | 185 | 15.68% | 84.32% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 91.95% | 8.05% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615022143 | C->T | INTERGENIC | None |