Detailed information of SNP:
|
SNP ID:
sf0615047050(Gbrowse)
Chromosome: chr06 Position: 15047050 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.99% | 43.01% |
| All Indica | 796 | 87.69% | 12.31% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615047050 | G->C | LOC_Os06g25760(LOC_Os06g25760.1) | Non-Synonymous SNP |