Detailed information of SNP:
|
SNP ID:
sf0615047734(Gbrowse)
Chromosome: chr06 Position: 15047734 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.43% | 43.57% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615047734 | G->A | LOC_Os06g25760(LOC_Os06g25760.1) | Non-Synonymous SNP |