Detailed information of SNP:
|
SNP ID:
sf0615067882(Gbrowse)
Chromosome: chr06 Position: 15067882 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 60.10% | 39.90% |
| All Indica | 794 | 93.70% | 6.30% |
| All Japonica | 496 | 5.85% | 94.15% |
| Aus | 58 | 67.24% | 32.76% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615067882 | T->C | INTERGENIC | None |