Detailed information of SNP:
|
SNP ID:
sf0615087127(Gbrowse)
Chromosome: chr06 Position: 15087127 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 96.62% | 3.38% |
| All Indica | 774 | 94.57% | 5.43% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 364 | 93.68% | 6.32% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 203 | 98.03% | 1.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615087127 | A->G | LOC_Os06g25830(LOC_Os06g25830.1) | Non-Synonymous SNP |