Detailed information of SNP:
|
SNP ID:
sf0615087192(Gbrowse)
Chromosome: chr06 Position: 15087192 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 96.77% | 3.23% |
| All Indica | 777 | 94.72% | 5.28% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 94.01% | 5.99% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615087192 | A->G | LOC_Os06g25830(LOC_Os06g25830.1) | Non-Synonymous SNP |