Detailed information of SNP:
|
SNP ID:
sf0615092099(Gbrowse)
Chromosome: chr06 Position: 15092099 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 62.21% | 37.79% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 62 | 59.68% | 40.32% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615092099 | A->G | INTERGENIC | None |