Detailed information of SNP:
|
SNP ID:
sf0615096743(Gbrowse)
Chromosome: chr06 Position: 15096743 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 59.21% | 40.79% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615096743 | T->C | INTERGENIC | None |