Detailed information of SNP:
|
SNP ID:
sf0615109844(Gbrowse)
Chromosome: chr06 Position: 15109844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 87.53% | 12.47% |
| All Indica | 777 | 81.98% | 18.02% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 87.10% | 12.90% |
| Indica II | 199 | 74.87% | 25.13% |
| Indica Intermediate | 206 | 79.61% | 20.39% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615109844 | G->A | LOC_Os06g25860(LOC_Os06g25860.1) | Non-Synonymous SNP |