Detailed information of SNP:
|
SNP ID:
sf0615111981(Gbrowse)
Chromosome: chr06 Position: 15111981 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 58.76% | 41.24% |
| All Indica | 762 | 30.45% | 69.55% |
| All Japonica | 494 | 96.36% | 3.64% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 358 | 31.28% | 68.72% |
| Indica II | 202 | 27.23% | 72.77% |
| Indica Intermediate | 202 | 32.18% | 67.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615111981 | G->A | INTERGENIC | None |