Detailed information of SNP:
|
SNP ID:
sf0615112513(Gbrowse)
Chromosome: chr06 Position: 15112513 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 50.90% | 49.10% |
| All Indica | 772 | 17.88% | 82.12% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 360 | 18.06% | 81.94% |
| Indica II | 207 | 16.91% | 83.09% |
| Indica Intermediate | 205 | 18.54% | 81.46% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615112513 | A->G | INTERGENIC | None |