Detailed information of SNP:
|
SNP ID:
sf0615149908(Gbrowse)
Chromosome: chr06 Position: 15149908 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 54.34% | 45.66% |
| All Indica | 788 | 92.77% | 7.23% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615149908 | C->T | LOC_Os06g25900(LOC_Os06g25900.1) | INTRON |