Detailed information of SNP:
|
SNP ID:
sf0615217630(Gbrowse)
Chromosome: chr06 Position: 15217630 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 91.12% | 8.88% |
| All Indica | 705 | 84.82% | 15.18% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 322 | 83.54% | 16.46% |
| Indica II | 185 | 91.35% | 8.65% |
| Indica Intermediate | 198 | 80.81% | 19.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615217630 | A->G | LOC_Os06g25990(LOC_Os06g25990.1) | Synonymous |