Detailed information of SNP:
|
SNP ID:
sf0615220081(Gbrowse)
Chromosome: chr06 Position: 15220081 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 54.12% | 45.88% |
| All Indica | 788 | 82.99% | 17.01% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 88.38% | 11.62% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 208 | 77.40% | 22.60% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615220081 | A->G | LOC_Os06g25990(LOC_Os06g25990.1) | INTRON |