Detailed information of SNP:
|
SNP ID:
sf0615232213(Gbrowse)
Chromosome: chr06 Position: 15232213 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 66.26% | 33.74% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 478 | 6.49% | 93.51% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 323 | 1.55% | 98.45% |
| Tropical Japonica | 88 | 19.32% | 80.68% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615232213 | G->A | INTERGENIC | None |