Detailed information of SNP:
|
SNP ID:
sf0615244466(Gbrowse)
Chromosome: chr06 Position: 15244466 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 58.18% | 41.82% |
| All Indica | 779 | 87.93% | 12.07% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 91.30% | 8.70% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 202 | 82.67% | 17.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615244466 | T->C | INTERGENIC | None |