Detailed information of SNP:
|
SNP ID:
sf0615244671(Gbrowse)
Chromosome: chr06 Position: 15244671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 59.80% | 40.20% |
| All Indica | 784 | 90.56% | 9.44% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 203 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615244671 | A->G | INTERGENIC | None |