Detailed information of SNP:
|
SNP ID:
sf0615246268(Gbrowse)
Chromosome: chr06 Position: 15246268 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 55.66% | 44.34% |
| All Indica | 795 | 27.67% | 72.33% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 21.18% | 78.82% |
| Indica II | 212 | 31.13% | 68.87% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615246268 | G->A | INTERGENIC | None |