Detailed information of SNP:
|
SNP ID:
sf0615247068(Gbrowse)
Chromosome: chr06 Position: 15247068 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 52.50% | 47.50% |
| All Indica | 789 | 23.83% | 76.17% |
| All Japonica | 467 | 94.65% | 5.35% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 16.04% | 83.96% |
| Indica II | 209 | 27.27% | 72.73% |
| Indica Intermediate | 206 | 34.47% | 65.53% |
| Temperate Japonica | 307 | 99.02% | 0.98% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615247068 | C->T | INTERGENIC | None |