Detailed information of SNP:
|
SNP ID:
sf0615248087(Gbrowse)
Chromosome: chr06 Position: 15248087 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 54.62% | 45.38% |
| All Indica | 777 | 21.36% | 78.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 18.33% | 81.67% |
| Indica II | 203 | 20.20% | 79.80% |
| Indica Intermediate | 203 | 28.08% | 71.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615248087 | G->A | LOC_Os06g26060(LOC_Os06g26060.1) | Synonymous |