Detailed information of SNP:
|
SNP ID:
sf0615248110(Gbrowse)
Chromosome: chr06 Position: 15248110 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 51.94% | 48.06% |
| All Indica | 753 | 87.52% | 12.48% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 360 | 90.56% | 9.44% |
| Indica II | 197 | 88.32% | 11.68% |
| Indica Intermediate | 196 | 81.12% | 18.88% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615248110 | C->A | LOC_Os06g26060(LOC_Os06g26060.1) | Non-Synonymous SNP |