Detailed information of SNP:
|
SNP ID:
sf0615269939(Gbrowse)
Chromosome: chr06 Position: 15269939 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 54.63% | 45.37% |
| All Indica | 791 | 91.78% | 8.22% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615269939 | G->A | INTERGENIC | None |