Detailed information of SNP:
|
SNP ID:
sf0615273133(Gbrowse)
Chromosome: chr06 Position: 15273133 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 56.61% | 43.39% |
| All Indica | 766 | 94.52% | 5.48% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 352 | 96.88% | 3.12% |
| Indica II | 205 | 91.71% | 8.29% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615273133 | C->T | LOC_Os06g26100(LOC_Os06g26100.1) | Non-Synonymous SNP |