Detailed information of SNP:
|
SNP ID:
sf0615291682(Gbrowse)
Chromosome: chr06 Position: 15291682 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 63.68% | 36.32% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615291682 | A->G | INTERGENIC | None |