Detailed information of SNP:
|
SNP ID:
sf0615328007(Gbrowse)
Chromosome: chr06 Position: 15328007 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.42% | 38.58% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615328007 | A->G | INTERGENIC | None |