Detailed information of SNP:
|
SNP ID:
sf0615333573(Gbrowse)
Chromosome: chr06 Position: 15333573 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 70.37% | 29.63% |
| All Indica | 777 | 48.13% | 51.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 40.33% | 59.67% |
| Indica II | 208 | 42.31% | 57.69% |
| Indica Intermediate | 207 | 67.63% | 32.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615333573 | G->A | INTERGENIC | None |