Detailed information of SNP:
|
SNP ID:
sf0615346150(Gbrowse)
Chromosome: chr06 Position: 15346150 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 63.81% | 36.19% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 437 | 8.01% | 91.99% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 280 | 3.57% | 96.43% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 66 | 13.64% | 86.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615346150 | T->C | LOC_Os06g26234(LOC_Os06g26234.2) | INTRON |
| sf0615346150 | T->C | LOC_Os06g26234(LOC_Os06g26234.1) | INTRON |
| sf0615346150 | T->C | LOC_Os06g26234(LOC_Os06g26234.3) | INTRON |