Detailed information of SNP:
|
SNP ID:
sf0615388359(Gbrowse)
Chromosome: chr06 Position: 15388359 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 68.90% | 31.10% |
| All Indica | 767 | 45.37% | 54.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 358 | 37.43% | 62.57% |
| Indica II | 210 | 42.86% | 57.14% |
| Indica Intermediate | 199 | 62.31% | 37.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0615388359 | C->T | LOC_Os06g26280(LOC_Os06g26280.1) | Synonymous |